ORF information
ORF ID TF00916 (frame 1) Gene ID pRL70116
Position and sequences 97923...99386(487 aa) Gene Name/synonym virD2 /traS
Organism Rhizobium leguminosarum bv viciae 3841 Cluster 9 genes
Product T-DNA border endonuclease VirD2
1stcategory P-T4SS 2ndcategory Endonuclease_MobA/VirD2 Family
3rdcategory Probable conjugation
Function Component of a DNA transfer and replication (Dtr) protein, which may be a part of the putative T4SS VirB/D4 homolog. Probably VirD2 (TraS) functions as a relaxase protein.
Miscellaneus R.leguminosarum biovar viciae (Rlv) strain 3841 (a spontaneous streptomycin-resistant mutant of field isolate 300) has six large plasmids; pRL10 is the pSym (symbiosis plasmid) and pRL7 and pRL8 are transferable by conjugation.
References PubMed:14617175 

Functional Annotation
  KEGG database
Organism R.leguminosarum Gene entry pRL70116
Gene name Synonyms
Definition putative endonuclease
Classification Unassigned
DBLinks GeneDB pRL70116 GeneID 4404451 GI 116255012
 
 
COG No results found !

Blast results (KEGG)
R.leguminosarum :  BlastP (output)
Score Expect Query coverage Subject coverage
994 0.0 100 100

InterPro
Evidence ID Name Loci start-end InterPro ID InterPro Name
HMMPfam PF03432 Relaxase [ 0 - 287 ] IPR005094 Endonuclease relaxase, MobA/VirD2
ProfileScan PS00213 LIPOCALIN [ 0 - 102 ] IPR002345 Lipocalin

GO (Gene Onthology)
ID Type Description
0005215 Molecular Function transporter activity
0005488 Molecular Function binding
0006810 Biological Process transport

Blast Results (Swiss-Prot)
Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result)
199 3e-50 77.6181 90.8257 P13462 T-DNA border endonuclease virD2

Topology
 
PHOBIUS txt

Protein localization analysis
 
Psort bacterial inner membrane-0.272-Affirmative (output)