ORF information
ORF ID TF00578 (frame 1) Gene ID XCC2483
Position and sequences 2952459...2954132(557 aa) Gene Name/synonym avhD4 -
Organism Xanthomonas campestris pv. campestris str. ATCC 33913 Cluster 67 genes
Product Type IV secretion system-coupling protein VirD4 homolog
1stcategory P-T4SS 2ndcategory VirD4/TraG Family
3rdcategory Unknown
Function
Miscellaneus

Functional Annotation
KEGG Database No results found !
 
COG No results found !

InterPro
Evidence ID Name Loci start-end InterPro ID InterPro Name
HMMPfam PF02534 TraG [ 0 - 551 ] IPR003688 TRAG protein
ScanRegExp PS00178 AA_TRNA_LIGASE_I [ 0 - 273 ] IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site
ScanRegExp PS00678 WD_REPEATS_1 [ 0 - 41 ] IPR001680 WD40 repeat

GO (Gene Onthology)
ID Type Description
0009291 Biological Process unidirectional conjugation
0016020 Cellular Component membrane
0000166 Molecular Function nucleotide binding
0004812 Molecular Function aminoacyl-tRNA ligase activity
0005524 Molecular Function ATP binding
0005737 Cellular Component cytoplasm
0006412 Biological Process translation
0006418 Biological Process tRNA aminoacylation for protein translation

Blast Results (Swiss-Prot)
Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result)
227 1e-58 82.0467 70.0447 P13464 Protein virD4

Topology
 
PHOBIUS txt

Protein localization analysis
 
Psort bacterial inner membrane-0.2911-Affirmative (output)