ORF information
ORF ID TF00048 (frame 1) Gene ID AGR_pAT_bx65
Position and sequences 169407...170417(336 aa) Gene Name/synonym avhB11 -
Organism Agrobacterium tumefaciens C58 Cereon Cluster 206 genes
Product Type IV secretion system protein VirB11 homolog
1stcategory P-T4SS 2ndcategory VirB11/TrbB/GspE Family
3rdcategory Conjugation
Function Component of the T4SS AvhB (Agrobacterium virulence homologue virB) that mediates the conjugal transfer of the pAtC58 cryptic plasmid between cells of Agrobacterium. The pAtC58 transfer occurs predominantly under soil and rhizosphere conditions in the absence of tumor or plant wound sites, suggesting that this plasmid may play a key role in these environments. AvhB11 binds ATP. Also, AvhB11 can function in place of trbB gene product.
Miscellaneus Both, pRSF1010 and pTiC58 inhibit conjugal transfer of pAtC58, suggesting an overlap between these delivery systems.
References PubMed:12169609 

Functional Annotation
  KEGG database
Organism A.tumefaciens_C Gene entry AGR_pAT_bx
Gene name virB Synonyms 11
Definition Type IV secretion protein homolog (VirB11)
Class Genetic Information Processing; Sorting and Degradation; Type IV secretion system [PATH:atc03080]
Classification Sorting and Degradation
DBLinks GeneID 1142380 GI 16119396 UniProt Q7D3R2
 
  COG Clusters of Orthologous Groups of proteins
 
Gene Classification Coords (size) Product
N 5 .. 336 (332) Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

Blast results (KEGG)
A.tumefaciens_C :  BlastP (output)
Score Expect Query coverage Subject coverage
653 0.0 100 100
54 5e-06 100 100

InterPro
Evidence ID Name Loci start-end InterPro ID InterPro Name
HMMPfam PF00437 GSPII_E [ 0 - 318 ] IPR001482 Type II secretion system protein E
HMMTigr TIGR02788 VirB11: P-type DNA transfer ATPase VirB11 [ 0 - 328 ] IPR014155 P-type DNA transfer ATPase VirB11
BlastProDom PD000739 Q93DB4_AGRTU_Q93DB4; [ 0 - 240 ] IPR001482 Type II secretion system protein E

GO (Gene Onthology)
ID Type Description
0005524 Molecular Function ATP binding
0005622 Cellular Component intracellular
0006810 Biological Process transport
0005524 Molecular Function ATP binding
0005622 Cellular Component intracellular
0006810 Biological Process transport

Blast Results (Swiss-Prot)
Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result)
383 e-106 95.5357 92.9775 Q6FYW0 Type IV secretion system protein virB11

Topology
 
PHOBIUS txt

Protein localization analysis
 
Psort bacterial inner membrane-0.1786-Affirmative (output)