ORF information
ORF ID TF00039 (frame 1) Gene ID RHE_PA00070
Position and sequences 75279...77279(666 aa) Gene Name/synonym virD4 -
Organism Rhizobium etli CFN 42 Cluster 67 genes
Product Type IV secretion system-coupling protein VirD4
1stcategory P-T4SS 2ndcategory VirD4/TraG Family
3rdcategory Probable effector translocator
Function Component of a T4SS VirB/D4 encoded in the plasmid p42a. Here, the system is predicted to be an effector translocator that is feasible for experimental testing.
Miscellaneus

Functional Annotation
  KEGG database
Organism R.etli Gene entry RHE_PA0007
Gene name virD Synonyms 4
Definition transport secretion system IV, VirD4 protein
Class Genetic Information Processing; Sorting and Degradation; Type IV secretion system [PATH:ret03080]
Classification Sorting and Degradation
DBLinks GeneID 3894863 GI 86359771 UNAM_a RE1PA0000070 UniProt Q2K2F8
 
  COG Clusters of Orthologous Groups of proteins
 
Gene Classification Coords (size) Product
U 45 .. 663 (619) Type IV secretory pathway, VirD4 components

Blast results (KEGG)
R.etli :  BlastP (output)
Score Expect Query coverage Subject coverage
1325 0.0 100 100

InterPro
Evidence ID Name Loci start-end InterPro ID InterPro Name
HMMPfam PF02534 TraG [ 0 - 579 ] IPR003688 TRAG protein

GO (Gene Onthology)
ID Type Description
0009291 Biological Process unidirectional conjugation
0016020 Cellular Component membrane

Blast Results (Swiss-Prot)
Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result)
1067 0.0 99.5495 99.8503 P18594 Protein virD4

Topology
 
PHOBIUS txt

Protein localization analysis
 
Psort (output)