ORF ID	TF00037 (frame 1)	Gene ID	OTBS_0007
Position and sequences	6617...8389(590 aa)	Gene Name/synonym	avhD4 -
Organism	Orientia tsutsugamushi str. Boryong	Cluster	67 genes
Product	Type IV secretion system-coupling protein VirD4 homolog
1stcategory	P-T4SS	2ndcategory	VirD4/TraG Family
3rdcategory	Unknown
Function
Miscellaneus	Several virB and virD4 genes of O. tsutsugamushi were transcriptionally active in cultured fibroblast and macrophage cell lines as well as in experimentally infected animals. This finding suggests that the T4SS may function in Orientia and may have a significant role in pathogenesis of scrub typhus.
References	PubMed:17483455  PubMed:21458586

	KEGG database
Organism	O.tsutsugamushi	Gene entry	OTBS_0007
Gene name	virD	Synonyms	4
Definition	type IV secretion system protein
Classification	Unassigned
DBLinks	GeneID 5218325 GI 148284004 UniProt A5CBW9
	COG Clusters of Orthologous Groups of proteins
	Gene Classification Coords (size) Product U 83 .. 589 (507) Type IV secretory pathway, VirD4 components

O.tsutsugamushi :  BlastP (output)

Score Expect Query coverage Subject coverage 1188 0.0 100 100

Evidence ID Name Loci start-end InterPro ID InterPro Name HMMPfam PF02534 TraG [ 0 - 571 ] IPR003688 TRAG protein ProfileScan PS00307 LECTIN_LEGUME_BETA [ 0 - 301 ] IPR001220 Legume lectin, beta domain

ID Type Description 0009291 Biological Process unidirectional conjugation 0016020 Cellular Component membrane 0005529 Molecular Function sugar binding

Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result) 244 7e-64 78.3051 70.0581 P09817 Protein virD4

PHOBIUS	txt

Psort	(output)