ORF information
ORF ID TF00022 (frame 1) Gene ID HPAG1_0499
Position and sequences 516241...518487(748 aa) Gene Name/synonym virD4 -
Organism Helicobacter pylori HPAG1 Cluster 67 genes
Product Type IV secretion system-coupling protein VirD4
1stcategory P-T4SS 2ndcategory VirD4/TraG Family
3rdcategory Effector translocator
Function Component of the type IV secretion system Cag/Vir, which is enconded in the cag patogenicity island PAI. The type IV secretion system Cag/Vir translocates the immunodominant antigen CagA protein into the cytosol of gastric epithelial cells (By similarity). VirD4 may help to deliver the T4SS substrate to the secretion machinery.
Miscellaneus

Functional Annotation
  KEGG database
Organism H.pylori_HPAG1 Gene entry HPAG1_0499
Gene name Synonyms
Definition cag pathogenicity island protein 5
Class hpa05120]
Classification Unassigned
DBLinks GeneID 4097933 GI 108562924 UniProt Q1CU06
 
  COG Clusters of Orthologous Groups of proteins
 
Gene Classification Coords (size) Product
U 136 .. 748 (613) Type IV secretory pathway, VirD4 components

Blast results (KEGG)
H.pylori_HPAG1 :  BlastP (output)
Score Expect Query coverage Subject coverage
1509 0.0 100 100

InterPro
Evidence ID Name Loci start-end InterPro ID InterPro Name
ProfileScan PS00018 EF_HAND_1 [ 0 - 428 ] IPR002048 Calcium-binding EF-hand
HMMPfam PF02534 TraG [ 0 - 713 ] IPR003688 TRAG protein

GO (Gene Onthology)
ID Type Description
0005509 Molecular Function calcium ion binding
0009291 Biological Process unidirectional conjugation
0016020 Cellular Component membrane

Blast Results (Swiss-Prot)
Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result)
77.4 2e-13 59.7594 72.9264 Q6FYV9 Type IV secretion system-coupling protein virD4

Topology
 
PHOBIUS txt

Protein localization analysis
 
Psort (output)