ORF information
ORF ID TF01940 (frame 1) Gene ID Atu6039
Position and sequences 49583...49882(99 aa) Gene Name/synonym trbD -
Organism Agrobacterium tumefaciens C58 UWash Cluster 19 genes
Product conjugal transfer protein TrbD homolog
1stcategory P-T4SS 2ndcategory VirB3/TrbD Family
3rdcategory Conjugation
Function Component of the T4SS Tra/Trb that mediates the conjugal transfer of the plasmid pTiC58 between cells of Agrobacterium.
Miscellaneus
References PubMed:9829924  PubMed:10438776  PubMed:2551885  PubMed:10692358 

Functional Annotation
  KEGG database
Organism A.tumefaciens_C Gene entry AGR_pTi_85
Gene name trbD Synonyms
Definition probable TrbD gene
Classification Unassigned
DBLinks GeneID 1142693 GI 16119851 Pfam VirB3 UniProt Q7D2P3
 
 
COG No results found !

Blast results (KEGG)
A.tumefaciens_C :  BlastP (output)
Score Expect Query coverage Subject coverage
198 9e-50 100 100

InterPro
Evidence ID Name Loci start-end InterPro ID InterPro Name
HMMPfam PF05245 TrbD [ 0 - 98 ] IPR007909 Conjugal transfer, TrbD, subgroup
HMMPIR PIRSF01785 Type IV secretory pathway, conjugal transfer TrbD component [ 0 - 91 ] IPR016704 Conjugal transfer, TrbD
GO (Gene Onthology)
 
GO No results found !

Blast Results (Swiss-Prot)
Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result)
169 4e-42 100 100 P54909 RecName: Full=Conjugal transfer protein trbD

Topology
 
PHOBIUS txt

Protein localization analysis
 
Psort bacterial inner membrane-0.6731-Affirmative (output)