ORF information
ORF ID TF01175 (frame 1) Gene ID RHE_PA00067
Position and sequences 71659...72105(148 aa) Gene Name/synonym virD1 -
Organism Rhizobium etli CFN 42 Cluster 4 genes
Product T-DNA border endonuclease VirD1
1stcategory P-T4SS 2ndcategory VirD1 Family
3rdcategory Probable effector translocator
Function Component of a DNA transfer and replication (Dtr) protein, which may be a part of the T4SS VirB/D4 encoded in the plasmid p42a. Here, the system is predicted to be an effector translocator that is feasible for experimental testing.
Miscellaneus
References PubMed:15516565 

Functional Annotation
  KEGG database
Organism R.etli Gene entry RHE_PA0006
Gene name virD Synonyms 1
Definition T-DNA border endonuclease, VirD1 protein [EC:3.1.-.-]
Classification Unassigned
DBLinks GeneID 3894860 GI 86359769 UNAM_a RE1PA0000067 UniProt Q2K2F6
 
 
COG No results found !

Blast results (KEGG)
R.etli :  BlastP (output)
Score Expect Query coverage Subject coverage
288 3e-77 100 100

InterPro
Evidence ID Name Loci start-end InterPro ID InterPro Name
BlastProDom PD021660 PD021660 [ 0 - 146 ] NULL NULL
GO (Gene Onthology)
 
GO No results found !

Blast Results (Swiss-Prot)
Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result)
214 1e-55 96.6216 97.2789 P13461 T-DNA border endonuclease virD1

Topology
 
PHOBIUS txt

Protein localization analysis
 
Psort bacterial inner membrane-0.1999-Affirmative (output)