ORF information
ORF ID TF00108 (frame 1) Gene ID PSPTO_4853
Position and sequences 5498405...5499661(418 aa) Gene Name/synonym trbB -
Organism Pseudomonas syringae pv. tomato str. DC3000 Cluster 206 genes
Product Conjugal transfer protein TrbB homolog
1stcategory P-T4SS 2ndcategory VirB11/TrbB/GspE Family
3rdcategory Unknown
Function
Miscellaneus

Functional Annotation
  KEGG database
Organism P.syringae Gene entry PSPTO_4853
Gene name Synonyms
Definition pilus assembly protein CpaF
Class Genetic Information Processing; Sorting and Degradation; Type II secretion system [PATH:pst03090]
Classification Sorting and Degradation
DBLinks GeneID 1186536 GI 28871968 TIGR PSPTO_4853 UniProt Q87VT2
 
  COG Clusters of Orthologous Groups of proteins
 
Gene Classification Coords (size) Product
U 17 .. 418 (402) Flp pilus assembly protein, ATPase CpaF

Blast results (KEGG)
P.syringae :  BlastP (output)
Score Expect Query coverage Subject coverage
815 0.0 100 100

InterPro
Evidence ID Name Loci start-end InterPro ID InterPro Name
BlastProDom PD000739 GSPII_E [ 0 - 290 ] IPR001482 Type II secretion system protein E

GO (Gene Onthology)
ID Type Description
0005524 Molecular Function ATP binding
0005622 Cellular Component intracellular
0006810 Biological Process transport

Blast Results (Swiss-Prot)
Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result)
190 1e-47 63.1579 38.835 Q58191 Uncharacterized protein MJ0781 [Contains: Mja klbA intein]

Topology
 
PHOBIUS txt

Protein localization analysis
 
Psort bacterial inner membrane-0.1786-Affirmative (output)