ORF information
ORF ID TF01005 (frame 1) Gene ID CAD31465.1
Position and sequences 70745...72490(581 aa) Gene Name/synonym virD4 -
Organism Mesorhizobium loti R7A Cluster 67 genes
Product Type IV secretion system-coupling protein VirD4
1stcategory P-T4SS 2ndcategory VirD4/TraG Family
3rdcategory Effector translocator
Function Component of a T4SS VirB/D4 homolog that plays a symbiotic role. T4SS is required for translocation of rhizobial effector proteins, such as Msi059 and Msi061 into the plant cells. VirD4 may function as a type IV coupling factor (T4CP) that could facilite communication between substrate and the transport pore. Probably VirD4 T4CP binds substrate and transfers it to VirB11.
Miscellaneus T4SS VirB/D4 is enconded on symbiotic island. The Mesorhizobium loti strain R7A symbiosis island is a 502-kb chromosomally integrated element which transfers to nonsymbiotic mesorhizobia in the environment, converting them to Lotus symbionts. It integrates into a phenylalanine tRNA gene in a process mediated by a P4-type integrase encoded at the left end of the element.
References PubMed:15469524  PubMed:12003951 

Functional Annotation
  KEGG database
Organism S.medicae Gene entry Smed_6143
Gene name Synonyms
Definition TraG family protein
Classification Unassigned
DBLinks GI 150378111
 
 
COG No results found !

Blast results (KEGG)
S.medicae :  BlastP (output)
Score Expect Query coverage Subject coverage
896 0.0 93.8038 99.4526

InterPro
Evidence ID Name Loci start-end InterPro ID InterPro Name
HMMPfam PF02534 TraG [ 0 - 572 ] IPR003688 TRAG protein
ProfileScan PS51257 PROKAR_LIPOPROTEIN [ 0 - 17 ] NULL NULL

GO (Gene Onthology)
ID Type Description
0009291 Biological Process unidirectional conjugation
0016020 Cellular Component membrane

Blast Results (Swiss-Prot)
Score Expect Coverage Query Coverage Subject Accesion Number Product (Click to view blast result)
893 0.0 95.8692 83.3832 P18594 Protein virD4

Topology
 
PHOBIUS txt

Protein localization analysis
 
Psort bacterial inner membrane-0.3293-Affirmative (output)